IL_9F9S_451

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

9F9S|1|S1|U|1370, 9F9S|1|S1|A|1371

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_451 not in the Motif Atlas

Homologous match to IL_8C3A_464

Geometric discrepancy: 0.4721

The information below is about IL_8C3A_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

9F9S|1|S1|G|1352
9F9S|1|S1|U|1353
9F9S|1|S1|G|1354
*
9F9S|1|S1|U|1369
9F9S|1|S1|U|1370
9F9S|1|S1|A|1371
9F9S|1|S1|U|1372
9F9S|1|S1|C|1373

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Sq

40S ribosomal protein S16-A

Chain St

40S ribosomal protein S19-A

Chain Su

Small ribosomal subunit protein uS10