IL_9F9S_458
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_458 not in the Motif Atlas
- Homologous match to IL_8C3A_471
- Geometric discrepancy: 0.0918
- The information below is about IL_8C3A_471
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.2
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9F9S|1|S1|G|1638
9F9S|1|S1|C|1639
9F9S|1|S1|C|1640
9F9S|1|S1|C|1641
*
9F9S|1|S1|G|1760
9F9S|1|S1|U|1761
9F9S|1|S1|A|1762
9F9S|1|S1|A|1763
9F9S|1|S1|C|1764
Current chains
- Chain S1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain CM
- mRNA
- Chain CP
- Transfer RNA; tRNA
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ld
- 60S ribosomal protein L41-A
Coloring options: