IL_9F9S_476
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- 9F9S|1|R1|U|794
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_476 not in the Motif Atlas
- Homologous match to IL_8P9A_414
- Geometric discrepancy: 0.3634
- The information below is about IL_8P9A_414
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.2
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
9F9S|1|R1|G|751
9F9S|1|R1|A|752
9F9S|1|R1|A|753
9F9S|1|R1|A|754
9F9S|1|R1|A|755
9F9S|1|R1|A|756
9F9S|1|R1|A|757
9F9S|1|R1|U|758
9F9S|1|R1|U|759
*
9F9S|1|R1|A|791
9F9S|1|R1|U|792
9F9S|1|R1|A|793
9F9S|1|R1|U|794
9F9S|1|R1|U|795
9F9S|1|R1|A|796
9F9S|1|R1|G|797
9F9S|1|R1|C|798
Current chains
- Chain R1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain Re
- 40S ribosomal protein S4-A
- Chain Rj
- 40S ribosomal protein S9-A
- Chain Rl
- 40S ribosomal protein S11-A
- Chain Rw
- 40S ribosomal protein S22-A
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