IL_9FBV_100

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9FBV|1|a|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FBV_100 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.0375

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

9FBV|1|a|U|1018
9FBV|1|a|U|1019
9FBV|1|a|A|1020
9FBV|1|a|A|1021
9FBV|1|a|G|1022
9FBV|1|a|U|1023
9FBV|1|a|G|1024
*
9FBV|1|a|C|1140
9FBV|1|a|U|1141
9FBV|1|a|A|1142
9FBV|1|a|A|1143
9FBV|1|a|A|1144

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain i

Large ribosomal subunit protein uL13