IL_9FBV_132

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9FBV|1|a|A|1801, 9FBV|1|a|C|1816, 9FBV|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FBV_132 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0449

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9FBV|1|a|U|1798
9FBV|1|a|G|1799
9FBV|1|a|C|1800
9FBV|1|a|A|1801
9FBV|1|a|A|1802
9FBV|1|a|A|1803
9FBV|1|a|C|1804
*
9FBV|1|a|G|1813
9FBV|1|a|G|1814
9FBV|1|a|A|1815
9FBV|1|a|C|1816
9FBV|1|a|G|1817
9FBV|1|a|U|1818
9FBV|1|a|A|1819
9FBV|1|a|U|1820
9FBV|1|a|A|1821

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

Large ribosomal subunit protein uL2