IL_9FBV_160

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

9FBV|1|a|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FBV_160 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0684

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

9FBV|1|a|C|2636
9FBV|1|a|U|2637
9FBV|1|a|G|2638
9FBV|1|a|A|2639
9FBV|1|a|G|2640
*
9FBV|1|a|C|2774
9FBV|1|a|G|2775
9FBV|1|a|A|2776
9FBV|1|a|G|2777
9FBV|1|a|A|2778
9FBV|1|a|U|2779
9FBV|1|a|G|2780
9FBV|1|a|A|2781
9FBV|1|a|G|2782

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain i

Large ribosomal subunit protein uL13