IL_9FCO_041

3D structure

PDB id

9FCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli 30S-IF1-IF3-mRNA-Kasugamycin complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

9FCO|1|B|A|1492, 9FCO|1|B|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FCO_041 not in the Motif Atlas

Geometric match to IL_5Z1I_002

Geometric discrepancy: 0.2228

The information below is about IL_5Z1I_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

9FCO|1|B|5MC|1407
9FCO|1|B|A|1408
9FCO|1|B|C|1409
*
9FCO|1|B|G|1491
9FCO|1|B|A|1492
9FCO|1|B|A|1493
9FCO|1|B|G|1494

Current chains

Chain B

16S rRNA

Nearby chains

Chain I

Translation initiation factor IF-1

Chain J

Translation initiation factor IF-3

Chain L

Small ribosomal subunit protein uS12