3D structure

PDB id
9FDA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2 Å

Loop

Sequence
UGAAAUCC*GAACUG
Length
14 nucleotides
Bulged bases
9FDA|1|B|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9FDA_029 not in the Motif Atlas
Homologous match to IL_5J7L_030
Geometric discrepancy: 0.0737
The information below is about IL_5J7L_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

9FDA|1|B|U|605
9FDA|1|B|G|606
9FDA|1|B|A|607
9FDA|1|B|A|608
9FDA|1|B|A|609
9FDA|1|B|U|610
9FDA|1|B|C|611
9FDA|1|B|C|612
*
9FDA|1|B|G|628
9FDA|1|B|A|629
9FDA|1|B|A|630
9FDA|1|B|C|631
9FDA|1|B|U|632
9FDA|1|B|G|633

Current chains

Chain B
16S rRNA

Nearby chains

Chain D
Small ribosomal subunit protein uS4
Chain H
Small ribosomal subunit protein uS8
Chain P
Small ribosomal subunit protein bS16
Chain Q
Small ribosomal subunit protein uS17

Coloring options:


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