IL_9FDA_043

3D structure

PDB id

9FDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

9FDA|1|B|A|1492, 9FDA|1|B|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FDA_043 not in the Motif Atlas

Geometric match to IL_5Z1I_002

Geometric discrepancy: 0.2355

The information below is about IL_5Z1I_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

9FDA|1|B|5MC|1407
9FDA|1|B|A|1408
9FDA|1|B|C|1409
*
9FDA|1|B|G|1491
9FDA|1|B|A|1492
9FDA|1|B|A|1493
9FDA|1|B|G|1494

Current chains

Chain B

16S rRNA

Nearby chains

Chain I

Translation initiation factor IF-1

Chain J

Translation initiation factor IF-3

Chain L

Small ribosomal subunit protein uS12