IL_9FIA_003

3D structure

PDB id

9FIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU(body) structure derived from the SSU sample of the mitoribosome from T. gondii.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FIA_003 not in the Motif Atlas

Geometric match to IL_8C3A_427

Geometric discrepancy: 0.1309

The information below is about IL_8C3A_427

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

9FIA|1|b2|G|38
9FIA|1|b2|U|39
9FIA|1|b2|C|40
*
9FIA|1|bT|G|9
9FIA|1|bT|U|10
9FIA|1|bT|C|11

Current chains

Chain b2

SSUE

Chain bT

SSUF

Nearby chains

Chain Be

unidentified peptide

Chain Bl

30S ribosomal protein S12, putative

Chain bE

RNA8