IL_9FIA_004

3D structure

PDB id

9FIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU(body) structure derived from the SSU sample of the mitoribosome from T. gondii.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CACG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FIA_004 not in the Motif Atlas

Geometric match to IL_1J2B_001

Geometric discrepancy: 0.3259

The information below is about IL_1J2B_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69301.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

9FIA|1|b2|C|40
9FIA|1|b2|A|41
9FIA|1|b2|C|42
9FIA|1|b2|G|43
*
9FIA|1|bT|C|5
9FIA|1|bT|G|6
9FIA|1|bT|A|7
9FIA|1|bT|A|8
9FIA|1|bT|G|9

Current chains

Chain b2

SSUE

Chain bT

SSUF

Nearby chains

Chain Bl

30S ribosomal protein S12, putative

Chain bN

SSUB