IL_9FIA_005
3D structure
- PDB id
- 9FIA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SSU(body) structure derived from the SSU sample of the mitoribosome from T. gondii.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.29 Å
Loop
- Sequence
- CUA*UUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9FIA_005 not in the Motif Atlas
- Geometric match to IL_4YHW_002
- Geometric discrepancy: 0.1444
- The information below is about IL_4YHW_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
9FIA|1|bA|C|5
9FIA|1|bA|U|6
9FIA|1|bA|A|7
*
9FIA|1|bE|U|11
9FIA|1|bE|U|12
9FIA|1|bE|G|13
Current chains
- Chain bA
- RNA19
- Chain bE
- RNA8
Nearby chains
- Chain B6
- Putative mitochondrial ribosomal protein s6-2
- Chain B9
- DnaJ domain-containing protein
- Chain BA
- Mitochondrial ribosomal protein, mS137
- Chain BO
- Putative 30S ribosomal protein S15
- Chain Bk
- Mitochondrial ribosomal protein, mS26
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