IL_9FIB_011

3D structure

PDB id

9FIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9FIB|1|B|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FIB_011 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.0671

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9FIB|1|B|G|147
9FIB|1|B|G|148
9FIB|1|B|A|149
9FIB|1|B|U|150
9FIB|1|B|A|151
9FIB|1|B|A|152
9FIB|1|B|C|153
*
9FIB|1|B|G|168
9FIB|1|B|C|169
9FIB|1|B|U|170
9FIB|1|B|A|171
9FIB|1|B|A|172
9FIB|1|B|U|173
9FIB|1|B|A|174
9FIB|1|B|C|175

Current chains

Chain B

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20