IL_9FIB_019

3D structure

PDB id

9FIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAG*CAGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FIB_019 not in the Motif Atlas

Geometric match to IL_5J7L_021

Geometric discrepancy: 0.062

The information below is about IL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33323.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

9FIB|1|B|C|440
9FIB|1|B|A|441
9FIB|1|B|G|442
*
9FIB|1|B|C|492
9FIB|1|B|A|493
9FIB|1|B|G|494
9FIB|1|B|A|495
9FIB|1|B|A|496
9FIB|1|B|G|497

Current chains

Chain B

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4