IL_9FIB_021

3D structure

PDB id

9FIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FIB_021 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.0743

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

9FIB|1|B|G|450
9FIB|1|B|A|451
9FIB|1|B|A|452
9FIB|1|B|G|453
9FIB|1|B|G|454
9FIB|1|B|G|455
*
9FIB|1|B|C|477
9FIB|1|B|A|478
9FIB|1|B|U|479
9FIB|1|B|U|480
9FIB|1|B|G|481
9FIB|1|B|A|482
9FIB|1|B|C|483

Current chains

Chain B

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16