IL_9FIB_038

3D structure

PDB id

9FIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9FIB|1|B|C|1400, 9FIB|1|B|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FIB_038 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.0927

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

9FIB|1|B|C|1399
9FIB|1|B|C|1400
9FIB|1|B|G|1401
*
9FIB|1|B|C|1501
9FIB|1|B|A|1502
9FIB|1|B|A|1503
9FIB|1|B|G|1504

Current chains

Chain B

16S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5

Chain Y

mRNA