IL_9G06_021

3D structure

PDB id

9G06 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-fMet-tRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G06_021 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.0743

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

9G06|1|B|G|450
9G06|1|B|A|451
9G06|1|B|A|452
9G06|1|B|G|453
9G06|1|B|G|454
9G06|1|B|G|455
*
9G06|1|B|C|477
9G06|1|B|A|478
9G06|1|B|U|479
9G06|1|B|U|480
9G06|1|B|G|481
9G06|1|B|A|482
9G06|1|B|C|483

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16