IL_9G06_034

3D structure

PDB id

9G06 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-fMet-tRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G06_034 not in the Motif Atlas

Homologous match to IL_4LFB_032

Geometric discrepancy: 0.0559

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

9G06|1|B|G|774
9G06|1|B|G|775
9G06|1|B|G|776
9G06|1|B|A|777
9G06|1|B|G|778
*
9G06|1|B|U|804
9G06|1|B|C|805

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain K

Small ribosomal subunit protein uS11