IL_9G1Z_063

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

9G1Z|1|1|G|1510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_063 not in the Motif Atlas

Homologous match to IL_8CRE_066

Geometric discrepancy: 0.0547

The information below is about IL_8CRE_066

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

9G1Z|1|1|U|1497
9G1Z|1|1|C|1498
9G1Z|1|1|A|1499
9G1Z|1|1|A|1500
9G1Z|1|1|C|1501
*
9G1Z|1|1|G|1509
9G1Z|1|1|G|1510
9G1Z|1|1|A|1511

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AM

60S ribosomal protein L39

Chain x

Ribosomal 60S subunit protein L17B

Chain z

Ribosomal protein L19