IL_9G1Z_068

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

9G1Z|1|1|U|1625, 9G1Z|1|1|U|1811

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_068 not in the Motif Atlas

Homologous match to IL_8CRE_071

Geometric discrepancy: 0.0703

The information below is about IL_8CRE_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_56317.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9G1Z|1|1|U|1623
9G1Z|1|1|C|1624
9G1Z|1|1|U|1625
9G1Z|1|1|U|1626
9G1Z|1|1|C|1627
*
9G1Z|1|1|G|1807
9G1Z|1|1|G|1808
9G1Z|1|1|A|1809
9G1Z|1|1|A|1810
9G1Z|1|1|U|1811
9G1Z|1|1|A|1812

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L27