IL_9G1Z_163
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 9G1Z|1|A|U|311, 9G1Z|1|A|C|349
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G1Z_163 not in the Motif Atlas
- Homologous match to IL_8CRE_408
- Geometric discrepancy: 0.0649
- The information below is about IL_8CRE_408
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9G1Z|1|A|U|309
9G1Z|1|A|A|310
9G1Z|1|A|U|311
9G1Z|1|A|C|312
9G1Z|1|A|A|313
9G1Z|1|A|A|314
*
9G1Z|1|A|U|346
9G1Z|1|A|U|347
9G1Z|1|A|U|348
9G1Z|1|A|C|349
9G1Z|1|A|A|350
9G1Z|1|A|A|351
9G1Z|1|A|C|352
9G1Z|1|A|G|353
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain J
- 40S ribosomal protein S8
- Chain M
- Ribosomal 40S subunit protein S11A
- Chain Y
- Ribosomal 40S subunit protein S23B
Coloring options: