IL_9G1Z_173
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G1Z_173 not in the Motif Atlas
- Homologous match to IL_8CRE_421
- Geometric discrepancy: 0.0643
- The information below is about IL_8CRE_421
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
9G1Z|1|A|A|548
9G1Z|1|A|G|549
9G1Z|1|A|G|550
9G1Z|1|A|G|551
9G1Z|1|A|C|552
9G1Z|1|A|A|553
9G1Z|1|A|A|554
9G1Z|1|A|G|555
*
9G1Z|1|A|C|585
9G1Z|1|A|U|586
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain D
- Ribosomal 40S subunit protein S2
- Chain K
- Ribosomal 40S subunit protein S9B
- Chain f
- 40S ribosomal protein S30
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