IL_9G33_028

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CAG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G33_028 not in the Motif Atlas

Geometric match to IL_5UNE_007

Geometric discrepancy: 0.1409

The information below is about IL_5UNE_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9G33|1|D2|C|550
9G33|1|D2|A|551
9G33|1|D2|G|552
*
9G33|1|D2|C|585
9G33|1|D2|A|586
9G33|1|D2|G|587

Current chains

Chain D2

5' ETS

Nearby chains

Chain JM

rRNA-processing protein FCF2

Chain UF

U3 small nucleolar RNA-associated protein 6