IL_9G33_033
3D structure
- PDB id
- 9G33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stalled 90S - Utp23-Krr1-deltaC3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- GUUA*UUUC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G33_033 not in the Motif Atlas
- Geometric match to IL_8P9A_356
- Geometric discrepancy: 0.1653
- The information below is about IL_8P9A_356
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
9G33|1|D3|G|109
9G33|1|D3|U|110
9G33|1|D3|U|111
9G33|1|D3|A|112
*
9G33|1|D3|U|302
9G33|1|D3|U|303
9G33|1|D3|U|304
9G33|1|D3|C|305
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DE
- 40S ribosomal protein S4-A
- Chain DI
- 40S ribosomal protein S8-A
- Chain DL
- 40S ribosomal protein S11-A
- Chain JE
- U3 small nucleolar ribonucleoprotein protein LCP5
Coloring options: