IL_9G33_034

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

9G33|1|D3|C|114, 9G33|1|D3|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G33_034 not in the Motif Atlas

Geometric match to IL_8P9A_381

Geometric discrepancy: 0.1577

The information below is about IL_8P9A_381

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

9G33|1|D3|U|113
9G33|1|D3|C|114
9G33|1|D3|G|115
9G33|1|D3|U|116
*
9G33|1|D3|A|300
9G33|1|D3|A|301

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DI

40S ribosomal protein S8-A

Chain DL

40S ribosomal protein S11-A