IL_9G33_039
3D structure
- PDB id
- 9G33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stalled 90S - Utp23-Krr1-deltaC3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- GUA*UUUUC
- Length
- 8 nucleotides
- Bulged bases
- 9G33|1|D3|U|260, 9G33|1|D3|U|261
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G33_039 not in the Motif Atlas
- Geometric match to IL_5B2P_002
- Geometric discrepancy: 0.275
- The information below is about IL_5B2P_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 79
Unit IDs
9G33|1|D3|G|204
9G33|1|D3|U|205
9G33|1|D3|A|206
*
9G33|1|D3|U|259
9G33|1|D3|U|260
9G33|1|D3|U|261
9G33|1|D3|U|262
9G33|1|D3|C|263
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DE
- 40S ribosomal protein S4-A
- Chain DI
- 40S ribosomal protein S8-A
- Chain JC
- Ribosome biogenesis protein ENP2
- Chain UT
- U3 small nucleolar RNA-associated protein 20
Coloring options: