IL_9G33_043
3D structure
- PDB id
- 9G33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stalled 90S - Utp23-Krr1-deltaC3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 9G33|1|D3|U|313, 9G33|1|D3|C|351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G33_043 not in the Motif Atlas
- Geometric match to IL_5J7L_014
- Geometric discrepancy: 0.2284
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9G33|1|D3|U|311
9G33|1|D3|A|312
9G33|1|D3|U|313
9G33|1|D3|C|314
9G33|1|D3|A|315
9G33|1|D3|A|316
*
9G33|1|D3|U|348
9G33|1|D3|U|349
9G33|1|D3|U|350
9G33|1|D3|C|351
9G33|1|D3|A|352
9G33|1|D3|A|353
9G33|1|D3|C|354
9G33|1|D3|G|355
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DI
- 40S ribosomal protein S8-A
- Chain DL
- 40S ribosomal protein S11-A
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