IL_9G33_065

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G33_065 not in the Motif Atlas

Geometric match to IL_4J50_002

Geometric discrepancy: 0.1597

The information below is about IL_4J50_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9G33|1|D3|U|1650
9G33|1|D3|A|1651
9G33|1|D3|C|1652
*
9G33|1|D3|G|1748
9G33|1|D3|A|1749
9G33|1|D3|A|1750

Current chains

Chain D3

18S rRNA

Nearby chains

Chain UL

U3 small nucleolar RNA-associated protein 12