IL_9G33_066

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G33_066 not in the Motif Atlas

Geometric match to IL_5LQO_002

Geometric discrepancy: 0.2439

The information below is about IL_5LQO_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9G33|1|D3|C|1653
9G33|1|D3|G|1654
9G33|1|D3|A|1655
9G33|1|D3|U|1656
*
9G33|1|D3|A|1744
9G33|1|D3|G|1745
9G33|1|D3|A|1746
9G33|1|D3|G|1747

Current chains

Chain D3

18S rRNA

Nearby chains

Chain UL

U3 small nucleolar RNA-associated protein 12