IL_9G5E_005

3D structure

PDB id

9G5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G5E_005 not in the Motif Atlas

Homologous match to IL_4LFB_004

Geometric discrepancy: 0.1406

The information below is about IL_4LFB_004

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

9G5E|1|A|C|694
9G5E|1|A|A|695
9G5E|1|A|U|696
*
9G5E|1|A|A|819
9G5E|1|A|G|820

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 7

Translation initiation factor IF-2, mitochondrial

Chain U

28S ribosomal protein S26, mitochondrial