IL_9G5E_009
3D structure
- PDB id
- 9G5E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translation-initiation state of human mitochondrial ribosome small subunit (State F)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCAC*GC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G5E_009 not in the Motif Atlas
- Geometric match to IL_3DIL_004
- Geometric discrepancy: 0.2356
- The information below is about IL_3DIL_004
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_74641.2
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 33
Unit IDs
9G5E|1|A|G|762
9G5E|1|A|C|763
9G5E|1|A|A|764
9G5E|1|A|C|765
*
9G5E|1|A|G|777
9G5E|1|A|C|778
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 0
- 28S ribosomal protein S34, mitochondrial
- Chain 3
- Aurora kinase A-interacting protein
- Chain L
- 28S ribosomal protein S15, mitochondrial
- Chain N
- 28S ribosomal protein S17, mitochondrial
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