IL_9G6J_006
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- CUCAGUAG*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G6J_006 not in the Motif Atlas
- Homologous match to IL_8CRE_006
- Geometric discrepancy: 0.0402
- The information below is about IL_8CRE_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_65594.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
9G6J|1|1|C|81
9G6J|1|1|U|82
9G6J|1|1|C|83
9G6J|1|1|A|84
9G6J|1|1|G|85
9G6J|1|1|U|86
9G6J|1|1|A|87
9G6J|1|1|G|88
*
9G6J|1|1|U|96
9G6J|1|1|G|97
9G6J|1|1|A|98
9G6J|1|1|A|99
9G6J|1|1|G|100
9G6J|1|1|C|101
9G6J|1|1|G|102
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain AB
- Ribosomal 60S subunit protein L28
- Chain AP
- Ribosomal 60S subunit protein L42A
- Chain t
- 60S ribosomal protein L13
- Chain v
- Ribosomal protein L15
- Chain y
- Ribosomal 60S subunit protein L18A
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