IL_9G6J_016
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 9G6J|1|1|A|398, 9G6J|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G6J_016 not in the Motif Atlas
- Geometric match to IL_8CRE_015
- Geometric discrepancy: 0.057
- The information below is about IL_8CRE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
9G6J|1|1|G|376
9G6J|1|1|A|377
9G6J|1|1|A|378
9G6J|1|1|C|379
*
9G6J|1|1|G|390
9G6J|1|1|A|391
9G6J|1|1|G|392
9G6J|1|1|U|393
9G6J|1|1|G|394
9G6J|1|1|A|395
9G6J|1|1|A|396
9G6J|1|1|A|397
9G6J|1|1|A|398
9G6J|1|1|A|399
9G6J|1|1|G|400
9G6J|1|1|U|401
9G6J|1|1|A|402
9G6J|1|1|C|403
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 9
- Ribosomal 60S subunit protein L26B
- Chain AM
- 60S ribosomal protein L39
- Chain x
- Ribosomal 60S subunit protein L17B
Coloring options: