IL_9G6J_017
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G6J_017 not in the Motif Atlas
- Homologous match to IL_8P9A_244
- Geometric discrepancy: 0.051
- The information below is about IL_8P9A_244
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9G6J|1|1|G|404
9G6J|1|1|U|405
9G6J|1|1|G|406
9G6J|1|1|A|407
9G6J|1|1|A|408
9G6J|1|1|A|409
9G6J|1|1|U|410
*
9G6J|1|4|A|13
9G6J|1|4|C|14
9G6J|1|4|G|15
9G6J|1|4|G|16
9G6J|1|4|A|17
9G6J|1|4|U|18
9G6J|1|4|C|19
Current chains
- Chain 1
- 25S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain AF
- Ribosomal 60S subunit protein L32
- Chain l
- Ribosomal 60S subunit protein L4B
- Chain x
- Ribosomal 60S subunit protein L17B
Coloring options: