IL_9G6J_056
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GUG*CC
- Length
- 5 nucleotides
- Bulged bases
- 9G6J|1|1|U|1204
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G6J_056 not in the Motif Atlas
- Homologous match to IL_8P9A_281
- Geometric discrepancy: 0.0942
- The information below is about IL_8P9A_281
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
9G6J|1|1|G|1203
9G6J|1|1|U|1204
9G6J|1|1|G|1205
*
9G6J|1|1|C|1292
9G6J|1|1|C|1293
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 0
- 60S ribosomal protein L20
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain AN
- Rpl40bp
- Chain q
- Ribosomal 60S subunit protein L9B
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