IL_9G6J_062
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G6J_062 not in the Motif Atlas
- Homologous match to IL_8P9A_289
- Geometric discrepancy: 0.0551
- The information below is about IL_8P9A_289
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
9G6J|1|1|G|1440
9G6J|1|1|U|1441
9G6J|1|1|A|1442
9G6J|1|1|G|1443
9G6J|1|1|U|1444
9G6J|1|1|A|1445
9G6J|1|1|G|1446
*
9G6J|1|1|C|2332
9G6J|1|1|G|2333
9G6J|1|1|A|2334
9G6J|1|1|A|2335
9G6J|1|1|A|2336
9G6J|1|1|C|2337
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain l
- Ribosomal 60S subunit protein L4B
- Chain x
- Ribosomal 60S subunit protein L17B
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