IL_9G6J_086

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

9G6J|1|1|C|2175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G6J_086 not in the Motif Atlas

Homologous match to IL_8CRE_089

Geometric discrepancy: 0.0683

The information below is about IL_8CRE_089

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

9G6J|1|1|C|2174
9G6J|1|1|C|2175
9G6J|1|1|A|2176
9G6J|1|1|G|2177
*
9G6J|1|1|C|2223
9G6J|1|1|G|2224

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain j

Ribosomal 60S subunit protein L2A