IL_9G6J_089

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

9G6J|1|1|A|2185

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G6J_089 not in the Motif Atlas

Homologous match to IL_8CRE_092

Geometric discrepancy: 0.3339

The information below is about IL_8CRE_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

9G6J|1|1|G|2184
9G6J|1|1|A|2185
9G6J|1|1|A|2186
9G6J|1|1|U|2187
9G6J|1|1|G|2188
*
9G6J|1|1|C|2213
9G6J|1|1|G|2214
9G6J|1|1|C|2215

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA