IL_9G6J_110

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CAU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G6J_110 not in the Motif Atlas

Geometric match to IL_8P9A_337

Geometric discrepancy: 0.0563

The information below is about IL_8P9A_337

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9G6J|1|1|C|2861
9G6J|1|1|A|2862
9G6J|1|1|U|2863
*
9G6J|1|1|G|2884
9G6J|1|1|C|2885
9G6J|1|1|G|2886

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 6

Ribosomal 60S subunit protein L23B

Chain k

60S ribosomal protein L3