IL_9G6J_112

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

9G6J|1|1|A|2883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G6J_112 not in the Motif Atlas

Homologous match to IL_8P9A_339

Geometric discrepancy: 0.1014

The information below is about IL_8P9A_339

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

9G6J|1|1|U|2863
9G6J|1|1|A|2864
*
9G6J|1|1|U|2881
9G6J|1|1|A|2882
9G6J|1|1|A|2883
9G6J|1|1|G|2884

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AN

Rpl40bp

Chain q

Ribosomal 60S subunit protein L9B

Chain w

Ribosomal 60S subunit protein L16A