IL_9G6J_155

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9G6J|1|A|U|168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G6J_155 not in the Motif Atlas

Homologous match to IL_8CRE_400

Geometric discrepancy: 0.0838

The information below is about IL_8CRE_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9G6J|1|A|G|141
9G6J|1|A|G|142
9G6J|1|A|A|143
9G6J|1|A|U|144
9G6J|1|A|A|145
9G6J|1|A|A|146
9G6J|1|A|C|147
*
9G6J|1|A|G|163
9G6J|1|A|C|164
9G6J|1|A|U|165
9G6J|1|A|A|166
9G6J|1|A|A|167
9G6J|1|A|U|168
9G6J|1|A|A|169
9G6J|1|A|C|170

Current chains

Chain A

18S rRNA

Nearby chains

Chain H

40S ribosomal protein S6

Chain Z

40S ribosomal protein S24