IL_9G6J_166

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G6J_166 not in the Motif Atlas

Homologous match to IL_8P9A_394

Geometric discrepancy: 0.0553

The information below is about IL_8P9A_394

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

9G6J|1|A|G|387
9G6J|1|A|G|388
9G6J|1|A|A|389
*
9G6J|1|A|U|404
9G6J|1|A|A|405
9G6J|1|A|C|406

Current chains

Chain A

18S rRNA

Nearby chains

Chain H

40S ribosomal protein S6

Chain J

40S ribosomal protein S8