IL_9G6J_186

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

9G6J|1|A|G|861

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G6J_186 not in the Motif Atlas

Homologous match to IL_8CRE_434

Geometric discrepancy: 0.0774

The information below is about IL_8CRE_434

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9G6J|1|A|C|859
9G6J|1|A|G|860
9G6J|1|A|G|861
9G6J|1|A|G|862
9G6J|1|A|G|863
*
9G6J|1|A|C|935
9G6J|1|A|A|936
9G6J|1|A|A|937
9G6J|1|A|G|938

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S1

Chain O

Ribosomal 40S subunit protein S13

Chain b

40S ribosomal protein S26