IL_9G6J_188
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 9G6J|1|A|G|898
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G6J_188 not in the Motif Atlas
- Homologous match to IL_8CRE_436
- Geometric discrepancy: 0.0939
- The information below is about IL_8CRE_436
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89047.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
9G6J|1|A|U|878
9G6J|1|A|U|879
9G6J|1|A|G|880
9G6J|1|A|U|881
9G6J|1|A|C|882
9G6J|1|A|A|883
9G6J|1|A|G|884
*
9G6J|1|A|C|895
9G6J|1|A|U|896
9G6J|1|A|U|897
9G6J|1|A|G|898
9G6J|1|A|G|899
9G6J|1|A|A|900
9G6J|1|A|U|901
9G6J|1|A|U|902
9G6J|1|A|U|903
9G6J|1|A|A|904
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain C
- 40S ribosomal protein S1
- Chain P
- Ribosomal 40S subunit protein S14B
Coloring options: