IL_9G6J_194
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G6J_194 not in the Motif Atlas
- Homologous match to IL_8CRE_442
- Geometric discrepancy: 0.0624
- The information below is about IL_8CRE_442
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
9G6J|1|A|G|1096
9G6J|1|A|G|1097
9G6J|1|A|A|1098
9G6J|1|A|G|1099
9G6J|1|A|U|1100
9G6J|1|A|A|1101
9G6J|1|A|U|1102
9G6J|1|A|G|1103
*
9G6J|1|A|U|1114
9G6J|1|A|G|1115
9G6J|1|A|A|1116
9G6J|1|A|A|1117
9G6J|1|A|A|1118
9G6J|1|A|C|1119
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain AO
- Small ribosomal subunit protein eS32
- Chain Y
- Ribosomal 40S subunit protein S23B
Coloring options: