3D structure

PDB id
9G6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.15 Å

Loop

Sequence
CUA*UGGAAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9G6J_213 not in the Motif Atlas
Geometric match to IL_8CRE_461
Geometric discrepancy: 0.0952
The information below is about IL_8CRE_461
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_94684.1
Basepair signature
cWW-tWH-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

9G6J|1|A|C|1375
9G6J|1|A|U|1376
9G6J|1|A|A|1377
*
9G6J|1|A|U|1393
9G6J|1|A|G|1394
9G6J|1|A|G|1395
9G6J|1|A|A|1396
9G6J|1|A|A|1397
9G6J|1|A|G|1398

Current chains

Chain A
18S rRNA

Nearby chains

Chain G
Ribosomal 40S subunit protein S5
Chain R
Ribosomal 40S subunit protein S16A
Chain S
Ribosomal 40S subunit protein S17B
Chain h
Guanine nucleotide-binding protein subunit beta-like protein

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.135 s