IL_9G6J_226
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- UGAG*CAAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G6J_226 not in the Motif Atlas
- Homologous match to IL_8CRE_474
- Geometric discrepancy: 0.0699
- The information below is about IL_8CRE_474
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
9G6J|1|A|U|1656
9G6J|1|A|G|1657
9G6J|1|A|A|1658
9G6J|1|A|G|1659
*
9G6J|1|A|C|1716
9G6J|1|A|A|1717
9G6J|1|A|A|1718
9G6J|1|A|A|1719
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain H
- 40S ribosomal protein S6
- Chain J
- 40S ribosomal protein S8
Coloring options: