IL_9G7C_005

3D structure

PDB id

9G7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of raiA ncRNA from Clostridium reveals a new RNA 3D fold

Experimental method

ELECTRON MICROSCOPY

Resolution

3.27 Å

Loop

Sequence

CGGC*GCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G7C_005 not in the Motif Atlas

Geometric match to IL_7LYF_005

Geometric discrepancy: 0.1972

The information below is about IL_7LYF_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

7

Unit IDs

9G7C|1|A|C|112
9G7C|1|A|G|113
9G7C|1|A|G|114
9G7C|1|A|C|115
*
9G7C|1|A|G|130
9G7C|1|A|C|131
9G7C|1|A|G|132
9G7C|1|A|G|133

Current chains

Chain A

raiA (224-MER)

Nearby chains