IL_9G7C_013

3D structure

PDB id

9G7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of raiA ncRNA from Clostridium reveals a new RNA 3D fold

Experimental method

ELECTRON MICROSCOPY

Resolution

3.27 Å

Loop

Sequence

GUCGGGUC*GCCGAC

Length

14 nucleotides

Bulged bases

9G7C|3|A|G|10, 9G7C|3|A|U|11

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G7C_013 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.288

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

9G7C|3|A|G|5
9G7C|3|A|U|6
9G7C|3|A|C|7
9G7C|3|A|G|8
9G7C|3|A|G|9
9G7C|3|A|G|10
9G7C|3|A|U|11
9G7C|3|A|C|12
*
9G7C|3|A|G|215
9G7C|3|A|C|216
9G7C|3|A|C|217
9G7C|3|A|G|218
9G7C|3|A|A|219
9G7C|3|A|C|220

Current chains

Chain A

raiA (224-MER)

Nearby chains