IL_9G8M_023

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUCC*GGC

Length

8 nucleotides

Bulged bases

9G8M|1|L5|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_023 not in the Motif Atlas

Geometric match to IL_5UNE_009

Geometric discrepancy: 0.2348

The information below is about IL_5UNE_009

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

9G8M|1|L5|G|482
9G8M|1|L5|G|483
9G8M|1|L5|U|484
9G8M|1|L5|C|485
9G8M|1|L5|C|486
*
9G8M|1|L5|G|670
9G8M|1|L5|G|671
9G8M|1|L5|C|672

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lr

60S ribosomal protein L28